Local Coverage Determination (LCD)

MolDX: Prometheus® IBD sgi Diagnostic® Policy

L37539

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Source LCD ID
N/A
LCD ID
L37539
Original ICD-9 LCD ID
Not Applicable
LCD Title
MolDX: Prometheus® IBD sgi Diagnostic® Policy
Proposed LCD in Comment Period
N/A
Source Proposed LCD
DL37539
Original Effective Date
For services performed on or after 03/19/2018
Revision Effective Date
For services performed on or after 02/29/2024
Revision Ending Date
N/A
Retirement Date
N/A
Notice Period Start Date
02/01/2018
Notice Period End Date
03/18/2018

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Issue

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Biannual review completed with no change in coverage.

Issue - Explanation of Change Between Proposed LCD and Final LCD

CMS National Coverage Policy

Title XVIII of the Social Security Act, §1862(a)(1)(a) allows coverage and payment for only those services that are considered to be reasonable and necessary.

42 Code of Federal Regulations (CFR) §410.32 Diagnostic x-ray tests, diagnostic laboratory tests, and other diagnostic tests: Conditions

CMS Manual, Publication 100-02, Medicare Benefit Policy Manual, Chapter 15, §80.0 Requirements for Diagnostic X-Ray, Diagnostic Laboratory, and Other Diagnostic Tests, §80.1.1 Certification Changes

Coverage Guidance

Coverage Indications, Limitations, and/or Medical Necessity

This is a non-coverage policy for the Prometheus® IBD sgi Diagnostic® test. The intended use of this test is to aid healthcare providers in differentiating inflammatory bowel disease (IBD) vs non-IBD, and Crohn’s disease (CD) vs ulcerative colitis (UC) in a comprehensive blood test. The test includes 9 serological markers: ASCA IgA, ASCA IgG, anti-OmpC IgA, anti-CBir1 IgG, anti-A4 Fla2 IgG, anti-FlaX IgG, IBD-specific pANCA autoantibody, IBD-specific pANCA IFA (perinuclear pattern), IBD-specific pANCA IFA DNAse Sensitivity; 4 genetic immune response markers (SNPs): ATG16L1, STAT3, NKX2-3, and ECM1; and 5 inflammatory biomarkers: ICAM-1, VCAM-1, VEGF, CRP, and SSA. A proprietary Smart Diagnostic Algorithm interprets patterns among the multiple assay values to produce an IBD score. The test results are reported as “consistent with IBD” (consistent with UC; consistent with CD, or inconclusive for UC vs CD) or “not consistent with IBD”. In addition to the algorithmic test interpretation, the results of the 17 biomarkers are also individually reported.

Summary of Evidence

CD and UC represent the 2 main forms of idiopathic chronic IBD. While the etiology remains idiopathic, evidence suggests that the ongoing inflammation in IBD results from persistent, overly aggressive inflammatory responses to a subset of commensal microorganisms in a genetically susceptible host with exposure to environmental triggers. CD is characterized by discontinuous, transmural regions of intestinal inflammation most frequently involving the terminal ileum and colon, but can affect any part of the gastrointestinal tract, with symptoms of abdominal pain, weight loss, and variable degrees of diarrhea, and complications of intestinal fibrosis, strictures, and fistula formation. In contrast, UC is limited to the mucosa and submucosa of the colon, with particular involvement of the rectum. Classic symptoms of active UC include diarrhea, hematochezia, tenesmus, and defecatory urgency. Extra intestinal manifestations of IBD occur in up to 25% of patients. Joints, skin, and eyes may be affected. In both CD and UC, disease activity is typically relapsing and remitting, although the disease course of CD is typically progressive. Although UC and CD can usually be differentiated on the basis of clinical, radiographic, endoscopic, and histologic findings, these conditions can be difficult to distinguish in about 10% to 15% of IBD patients.

Evolution of IBD Testing
In the mid-2000s, 2 serologic markers – anti-Saccharomyces cerevisiae antibodies (ASCA) and perinuclear anti-neutrophil cytoplasmic antibodies (pANCA) – were used to diagnose IBD and distinguish between UC and CD. Studies had shown that patients with CD had significantly higher ASCA antibodies than did controls or patients with UC. The reason CD patients have both IgA and IgG-ASCA is unclear. Overall, the sensitivity for either IgA or IgG-ASCA is in the range of 55% with specificity of about 90%. On the other hand, pANCA, a true autoantibody, was observed to be associated with colonic forms of IBD, particularly UC, with a sensitivity of approximately 60-70%. However, these pANCA–positive CD patients typically have a clinical phenotype resembling left-sided UC, so pANCA detection alone is of little value in distinguishing between UC and Crohn’s colitis.

A second generation IBD panel (IBD First Step ®) was marketed by Prometheus Laboratories (2000) consisting of more sensitive ASCA and pANCA assays and the addition of a second microbial antigen, OmpC. Anti-OmpC was added to increase the sensitivity for CD. Subsequently, a third-generation serology panel (IBD Serology 7) was offered by Prometheus Laboratories in 2006. The panel is composed of the following markers: ASCA-IgA, ASCA-IgG, anti-OmpC-IgA, anti-CBir1-IgA, and 3 ANCA tests: pANCA, ANCA-IgG and DNAse sensitive pANCA. The Smart Diagnostic Algorithm analyzes and correlates test results with patterns known to the database to be associated with IBD. It supposedly can predict an IBD diagnosis, even when all 7 of the parameters of the IBD Serology 7 panel would be considered normal on the basis of the reference ranges provided.1 It was reported to identify another 20% or more of otherwise seronegative CD patients.2 The IBD Serology 7 panel has a sensitivity of 93%, specificity of 95%, and positive predictive value of 96% in population prevalence of 59% according to Prometheus. A positive anti-CBir1 can additionally help distinguish between UC
and CD in pANCA positive patients. However, in a comparison study evaluating the predictive IBD Serology 7 with routine blood test (IgA-ASCA, IgGASCA) in a pediatric population referred for initial evaluation of suspected IBD, the sensitivity, specificity, positive predictive value, negative predictive value, and k value for the serologic panel was 67%, 76%, 63%,79%, and 47%. The antiflagellin antibody assay had sensitivity of 50% and specificity of 53%. Despite the inclusion of antiflagellin in the IBD7 panel, the IBD7 panel had lower predictive values compared with routine laboratory tests in pediatric screening for IBD3.

 

Concern has been raised about serologic testing for IBD because the data evaluating the role of serologic testing were obtained in individuals with a known diagnosis of either CD or UC. In many of these studies, the controls were normal healthy individuals. The use of the Smart Diagnostic Algorithm based on pattern recognition has not been published in a peer-reviewed journal. Similarly, the characteristics of the validation cohort (age, gender, race, etc.) are not known or whether any of these patient characteristics affect serologic markers. However, the greatest uncertainty pertains to the precise role for serologic testing in the diagnosis of IBD patients. Austin, et al1 state that “While there are no prospectively validated data on the accuracy of IBD serologic testing in patients with suspected IBD, the presence of positive serologic markers likely does increase the probability that the person has IBD compared with the general population”. However, they note that when a physician has a reasonable index of suspicion for IBD, more definitive imaging and endoscopic studies are required to confirm or refute the diagnosis and plan treatment, regardless of the serologic results. When the physician has a low index of suspicion for IBD, a positive serologic test is likely to result in unnecessary evaluation, and a negative serologic test only adds additional expense without benefit. These authors specify that further research is required to develop the evidence that is necessary for rational use of serologic testing.

The American College of Gastroenterology, in its guideline on the clinical management of Crohn’s Disease in adults, states that serologic tests are not routinely recommended to establish a diagnosis of CD.4 The American College of Gastroenterology, in its “Ulcerative Colitis Practice Guidelines in Adults,”5 specifies that serologic testing (ANCA/ASCA) may be useful in the occasional patient in whom no other clinical or pathologic features allow a differential diagnosis between UC and CD. Additionally, serological studies evaluating anti-glycan antibodies and antibodies to microbial antigens are being studied to support the diagnosis of inflammatory bowel disease, but the reliability of these tests in helping establish a diagnosis is still not sufficient.5

 

The fourth iteration of Prometheus’ IBD testing, IBD sgi Diagnostic® test, combines serologic (n=8), genetic (n=4) and inflammatory biomarkers (n=5). In addition to the 7 serologic tests in the IBD Serology 7, 2 additional serologic markers: anti-Fla-X and anti-A4- FL2; 4 genetic markers: ATG16L1, ECM1, NKX2.3 and STAT3; and 4 inflammatory markers: VEGF, ICAM and VCAM, CRP and SAA are marked to increase the discriminatory ability of the assay to be an adjunct in the diagnosis of UC vs CD. The IBD sgi Diagnostic® product monograph6 includes an extensive bibliography that documents associations of the 17 component markers, individually and in combination, with UC and/or CD. Development and performance characteristics of the 17-marker panel are described without citation, and it is unclear what standard criterion was used for diagnosis. Overall sensitivity for IBD, UC, and CD is reported as 74%, 98%, and 89%, respectively; specificity is reported as 90%, 84%, and 81%, respectively; receiver operating characteristic (ROC) analysis showed greater discrimination with the 17-marker panel (area under the curve [AUC], 0.871) compared with any individual marker (greatest AUC=0.690 for IgA anti-Saccharomyces cerevisiae antibodies [ASCA]). Test performance characteristics for distinguishing UC from CD were not provided.

In a 2012 review of the monograph, Shirts et al,7 observed that serologic tests for ASCA-IgA, ASCA-IgG, and atypical perinuclear anti-neutrophil cytoplasmic antibody are standard of care in the diagnostic workup of IBD, although not all investigators include these tests in recommended diagnostic strategies. These 3 markers are included in the 17-marker panel. Based on a meta-analysis of 60 studies (total N=11,608), pooled sensitivity and specificity of the 3-test panel were 63% and 93%, respectively, for diagnosing IBD. Because the product monograph does not include a comparison of the 17-marker panel with the 3- marker panel, incremental improvement in diagnosis with the 17-marker panel is unknown. Shirts et al, calculated an AUC for the 3-marker panel of 0.899.

Analysis of Evidence (Rationale for Determination)

Level of Evidence
Quality: Poor
Strength: Moderate
Weight: Moderate

Although manufacturer data supports clinical validity of the test for diagnosing IBD, this evidence is insufficient to support an indirect chain of evidence for clinical utility due to lack of details about study methodology and lack of replication of the findings. For distinguishing UC from CD, clinical validity has not been established. No studies examining the clinical utility of IBD sgi Diagnostic® have been identified. Furthermore, there are no US Preventive Services Task Force (USPSTF) recommendations for genetic or molecular testing for IBDs, and no recommendations for multi-marker panels that include genetic tests to facilitate diagnosis or prognosis of CD or UC.4, 5 Consequently, this assay does not meet Medicare’s reasonable and necessary criteria for coverage. Additionally, each of the individual components that comprise this assay, except ASCA-IgA, ASCA-IgG, and atypical perinuclear anti-neutrophil cytoplasmic antibody, are additionally non-covered for the diagnosis of IBD.

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Bibliography
  1. Austin GL, Herfarth HH, Sandler RS. A critical evaluation of serologic markers for inflammatory bowel disease. Clin Gastroenterol Hepatol. 2007; (5):545-547. doi:10.1016/j.cgh.2007.03.006
  2. Targan SR, Landers CJ, Yang H, et al. Antibodies to CBir1 flagellin define a unique response that is associated independently with complicated Crohn’s disease. Gastroenterology.2005; (7):2020-2028. doi:10.1053/j.gastro.2005.03.046
  3. Benor S, Russell GH, Silver M, et al. Shortcomings of the inflammatory bowel disease Serology 7 Panel. Pediatrics. 2010;125(6): 1230-1236. doi:10.1542/peds.2009-1936
  4. Lichtenstein GR, Loftus EV, Isaacs KL, et al. ACG clinical guideline: Management of Crohn’s disease in adults. Am J Gastroenterol 2018; (4) 113:481–517; doi: 10.1038/ajg.2018.27
  5. Kornbluth A, Sachar DB; Practice Parameters Committee of the American College of Gastroenterology. Ulcerative colitis practice guidelines in adults: American College of Gastroenterology, practice parameters committee. Am J Gastroenterol. 2010; 105 (3):501-524 doi: 10.1038/ajg.2009.727
  6. The next generation IBD diagnostic test: The synergistic role of serology, genetics, and inflammation in the diagnosis of inflammatory bowel disease. San Diego, CA: Prometheus Laboratories Inc.; 2011. Accessed 1/11/2024.
  7. Shirts B, von Roon AC, Tebo AE. The entire predictive value of the Prometheus IBD sgi Diagnostic product may be due to the three least expensive and most available components. AMJ Gastroenterol. 2012; 107(11):1760-1761. doi: 10.1038/ajg.2012.238

Revision History Information

Revision History Date Revision History Number Revision History Explanation Reasons for Change
02/29/2024 R6

Posted 02/29/2024: Under LCD Title added registered mark to Prometheus and where applicable throughout the LCD. Under CMS National Coverage Policy updated regulation descriptions and section headings. Revised 3rd regulation to remove “§80.1.2 A/B MAC (B) Contacts With Independent Clinical Laboratories”. Under Bibliography changes were made to citations to reflect AMA citation guidelines. Formatting, punctuation, and typographical errors were corrected throughout the LCD.

  • Other (Review)
12/29/2022 R5

Posted 12/29/2022: Review completed 12/05/2022 with no change in coverage. Punctuation and grammar corrections made throughout the LCD.

  • Other (Review)
02/25/2021 R4

02/25/2021 Under LCD Title added registered mark to Prometheus IBD sgi Diagnostic and where applicable throughout the LCD. Under CMS National Coverage Policy updated descriptions and added section headings to regulations. Revised section in regulation CMS Internet-Only Manual, Pub 100-02, Chapter 15, from 80.2 to 80.1.2. Under Bibliography, changes made to citations to reflect AMA citation guidelines and broken hyperlink was corrected for citation #6. Formatting, punctuation and typographical errors were corrected throughout the LCD. Acronyms were defined and inserted where appropriate throughout the LCD. At this time, 21st Century Cures Act will apply to new and revised LCDs that restrict coverage which requires comment and notice. This revision is not a restriction to the coverage determination; and, therefore not all the fields included on the LCD are applicable as noted in this policy. Review completed 01/04/2021.

  • Other (Review)
11/01/2019 R3

Change Request (CR) 10901 Local Coverage Determinations (LCDs): it will no longer be appropriate to include Current Procedure Terminology (CPT)/Health Care Procedure Coding System (HCPCS) codes or International Classification of Diseases Tenth Revision-Clinical Modification (ICD-10-CM) codes in the LCDs. All CPT/HCPCS and ICD-10 codes have been removed from this LCD and placed in Billing and Coding: Immune Globulins
related to this LCD. Consistent with Change Request 10901, if any language from IOMs and/or regulations was present in the LCD, it has been removed and the applicable manual/regulation has been referenced.

  • Other (compliance with CR10901)
03/01/2019 R2

03/01/2019-Review completed 01/04/2019. Updated bibliography reference #4 & #6. Revised the Evolution of IBD Testing paragraph to be consistent with the updated papers cited. Removed “The AGA states that serologic testing may have important consequences in terms of counseling, prognosis, and the choice of medical and surgical therapies5. Additionally, serological studies evaluating antibodies against Saccharomyces cerevisiae, antineutrophil cytoplasmic antibodies, antibodies directed against CBir1, OmpC are evolving to provide adjunctive support for the diagnosis of CD but are not sufficiently sensitive or specific to be recommended for use as a screening tools”.

  • Other (Review)
03/19/2018 R1

02/01/2018 - Added Notice Period Start Date of 02/01/2018 and Notice Period End Date of 03/18/2018 that was omitted during revision. No other changes to policy or coverage.

  • Other
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12/22/2022 12/29/2022 - 02/28/2024 Superseded View
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