PROPOSED Local Coverage Determination (LCD)

MolDX: Non-Next Generation Sequencing Tests for the Diagnosis of BCR-ABL Negative Myeloproliferative Neoplasms

DL39927

Expand All | Collapse All
Proposed LCD
Proposed LCDs are works in progress that are available on the Medicare Coverage Database site for public review. Proposed LCDs are not necessarily a reflection of the current policies or practices of the contractor.

Document Note

Note History

Contractor Information

Proposed LCD Information

Document Information

Source LCD ID
N/A
Proposed LCD ID
DL39927
Original ICD-9 LCD ID
Not Applicable
Proposed LCD Title
MolDX: Non-Next Generation Sequencing Tests for the Diagnosis of BCR-ABL Negative Myeloproliferative Neoplasms
Proposed LCD in Comment Period
Source Proposed LCD
Original Effective Date
N/A
Revision Effective Date
N/A
Revision Ending Date
N/A
Retirement Date
N/A
Notice Period Start Date
N/A
Notice Period End Date
N/A

CPT codes, descriptions, and other data only are copyright 2023 American Medical Association. All Rights Reserved. Applicable FARS/HHSARS apply.

Fee schedules, relative value units, conversion factors and/or related components are not assigned by the AMA, are not part of CPT, and the AMA is not recommending their use. The AMA does not directly or indirectly practice medicine or dispense medical services. The AMA assumes no liability for data contained or not contained herein.

Current Dental Terminology © 2023 American Dental Association. All rights reserved.

Copyright © 2024, the American Hospital Association, Chicago, Illinois. Reproduced with permission. No portion of the AHA copyrighted materials contained within this publication may be copied without the express written consent of the AHA. AHA copyrighted materials including the UB‐04 codes and descriptions may not be removed, copied, or utilized within any software, product, service, solution, or derivative work without the written consent of the AHA. If an entity wishes to utilize any AHA materials, please contact the AHA at 312‐893‐6816.

Making copies or utilizing the content of the UB‐04 Manual, including the codes and/or descriptions, for internal purposes, resale and/or to be used in any product or publication; creating any modified or derivative work of the UB‐04 Manual and/or codes and descriptions; and/or making any commercial use of UB‐04 Manual or any portion thereof, including the codes and/or descriptions, is only authorized with an express license from the American Hospital Association. The American Hospital Association (the "AHA") has not reviewed, and is not responsible for, the completeness or accuracy of any information contained in this material, nor was the AHA or any of its affiliates, involved in the preparation of this material, or the analysis of information provided in the material. The views and/or positions presented in the material do not necessarily represent the views of the AHA. CMS and its products and services are not endorsed by the AHA or any of its affiliates.

Issue

Issue Description

This LCD outlines limited coverage for this service with specific details under Coverage Indications, Limitations and/or Medical Necessity.

Issue - Explanation of Change Between Proposed LCD and Final LCD

CMS National Coverage Policy

Title XVIII of the Social Security Act, §1862(a)(1)(A) allows coverage and payment for only those services that are considered to be reasonable and necessary.

42 CFR §410.32(a) Diagnostic x-ray tests, diagnostic laboratory tests, and other diagnostic tests: Conditions

CMS Internet-Only Manual, Pub. 100-02, Medicare Policy Manual, Chapter 15, §80 Requirements for Diagnostic X-Ray, Diagnostic Laboratory, and Other Diagnostic Tests, §80.1.1 Certification Changes

Coverage Guidance

Coverage Indications, Limitations, and/or Medical Necessity

Indications and Limitations of Coverage

This policy provides coverage for multi-gene non-next generation sequencing (NGS) panel testing for the diagnostic workup of BCR-ABL negative myeloproliferative neoplasms (MPNs), and limited coverage for single-gene testing of patients with BCR-ABL negative MPNs. Classical BCR-ABL negative MPNs include Polycythemia Vera (PV), Essential Thrombocythemia (ET) and Primary Myelofibrosis (PMF), and non-classical BCR-ABL negative MPNs include Chronic Neutrophilic Leukemia (CNL) and Chronic Eosinophilic Leukemia, Not Otherwise Specified (CEL, NOS), among other rare entities. Myelodysplastic/Myeloproliferative neoplasms are considered a separate class outside the scope of this LCD.

Testing myeloid and suspected neoplasms by NGS is covered by a separate LCD, Next-Generation Sequencing Lab-Developed Tests for Myeloid Malignancies and Suspected Myeloid Malignancies (L38047).

ALL of the following criteria must be met:

1. The patient is being evaluated for a BCR-ABL-negative MPN according to national or international consensus diagnostic criteria (i.e., World Health Organization (WHO); International Consensus Classification (ICC)).

2. Testing follows the assessment of BCR-ABL (this is required unless the patient is only suspected of having PV).

3. The test is comprised of one or more highly sensitive single- or multi- gene assays (i.e. quantitative polymerase chain reaction [PCR], digital droplet PCR [ddPCR]) that can accurately detect a minimum variant allele frequency (VAF) of <1% for JAK2 (and 1-3% for CALR and MPL when they are included in the testing).

4. If testing is performed using single gene tests, a sequential and reflexive approach is expected. Once a positive result is obtained and the appropriate diagnosis is established, further testing should stop unless otherwise indicated and as further described below.

  • When testing for the classical BCR-ABL-negative MPNs (PV, ET, or PMF) using single gene tests, reflex testing to the next gene will be considered reasonable and necessary according to the following sequence of tests for known driver mutations:
    1. BCR-ABL negative test results, progress to ii.
      • Note: For the rare patient with high clinical suspicion of PV despite a positive BCR-ABL result, testing for a mutation in Janus Kinase 2 (JAK2) mutation may still be performed.
    2. JAK2 V617F negative test results (this includes JAK2 V617F positive at <1% VAF), progress to iii or iv.
    3. JAK2, exon 12 (required when PV is suspected)
    4. Calreticulin (CALR) and Thrombopoietin Receptor (MPL) driver mutations (required when ET or PMF is suspected)
      • NOTE: testing for CALR/MPL does NOT require a negative JAK2 exon 12, just a negative JAK2 V617F result.

5. If testing is performed using a panel (i.e., multiplex PCR) the panel must include at least the minimum necessary genes and gene alterations that would be reasonably expected by the test to achieve a diagnosis according to national or international consensus guidelines, given the specific MPN subtype suspected. For example:

  • Molecular testing for mutations in JAK 2 (including V617F and exon 12), CALR and MPL genes is considered medically necessary for the identification of the classical MPNs.
    1. However, if the Accelerated/blast phase of PMF is suspected at diagnosis, molecular testing should also include acute myeloid leukemia (AML)- associated mutations and would likely require the performance of a NGS panel; in this case, a panel that does not include the AML-associated mutations does not meet the minimum necessary gene requirements.
  • Additional MPN-associated genes must also be included as appropriate for the identification of other non-classical BCR-ABL-negative MPNs. For example, when CNL is suspected, testing for the colony stimulating factor 3 receptor (CSF3R) is required. Note also that testing for CNL requires the exclusion of the classical BCR-ABL-negative MPNs.

6. Patients with high suspicion of a BCR-ABL negative MPN who test negative by a non-NGS test for mutations in JAK2 (including the detection of JAK2 V617F at a VAF <1%), CALR, MPL and/or CSF3R may have a subsequent NGS panel performed for additional relevant mutations, as outlined in national or international consensus guidelines. The additional testing by NGS must comprise non-duplicative genetic alterations and fulfill the criteria outlined in this policy.

7. Clinical validity (CV) of analytes measured must be established through a study published in the peer-reviewed literature for the intended use of the test in the intended population.

8. The test is being used (a) in a patient who is part of the population in which the test was analytically validated and (b) according to the intended use of the test.

9. The test satisfactorily completes a technical assessment (TA) that will evaluate and confirm that the analytical validity (AV), clinical validity (CV), and clinical utility (CU) criteria set in this policy are met to establish the test as Reasonable and Necessary.

10. Tests utilizing a similar methodology or evaluating a similar molecular analyte to a test for which there is a generally accepted testing standard or for which existing coverage exists must demonstrate equivalent or superior test performance (i.e., sensitivity and/or specificity) when used for the same indication in the intended-use population.

11. Testing is performed for diagnosis and not as a test of cure or for monitoring minimal residual disease (MRD).

Summary of Evidence

THE MOLECULAR DIAGNOSIS OF MYELOPROLIFERATIVE NEOPLASMS

Myeloproliferative neoplasms (MPNs) are a group of conditions that cause abnormal growth of blood cells in the bone marrow. They include polycythemia vera (PV), essential thrombocythemia (ET), primary myelofibrosis (PMF), and other entities such as chronic myeloid leukemia (CML), chronic neutrophilic leukemia (CNL), chronic eosinophilic leukemia not otherwise specified (CEL-NOS) and MPN, unclassifiable (MPN-U). PV, ET, and PMF are further classified as Philadelphia chromosome- or BCR-ABL-negative MPNs.1

The diagnosis of a MPN is suspected based upon clinical, laboratory, and pathological findings (i.e., bone marrow morphology). MPNs are related, but distinct from, myelodysplastic syndromes (MDS). In general, MDS are characterized by morphologic dysplasia and ineffective or dysfunctional blood cells, while MPNs are typically characterized by an increase in the number of blood cells (erythrocytosis, thrombocytosis, and/or leukocytosis).

Classification systems for MPNs include those established by the World Health Organization (WHO) and the International Consensus Classification (ICC).2,3 The ICC was established with input from prior WHO editors and senior advisors, leaders from the Society for Hematopathology (SH) and the European Association for Haematopathology (EAHP).4 Though there is significant overlap between the two classification systems, there are some differences between them. For example, the WHO 5th edition no longer incorporates increased red cell mass as a diagnostic criterion for the diagnosis of PV.2

CLASSICAL BCR-ABL-NEGATIVE MPNs (PV, ET, and PMF)

Polycythemia Vera (PV)

PV is a chronic MPN characterized by increased hemoglobin, hematocrit and red blood cell mass, and with bone marrow biopsy showing panmyelosis.2,3,5,6 Common clinical presentations include pruritis (in nearly half of cases), splenomegaly, and thrombosis; however, patients may also be asymptomatic and the diagnosis may be suspected based on findings from a complete blood count (CBC) performed for other reasons. There is an associated increased risk for thrombosis and transformation to AML or PMF and the most frequent causes of death are leukemic transformation, second malignancies, and thrombotic complications.6

The JAK2 V617F mutation in exon 14 is present in the vast majority of PV, accounting for approximately 95-98% of cases. Functionally similar insertions and deletions in JAK2 exon 12 account for most remaining cases of JAK2 V617F mutation-negative PV. Together, they are identified in 98-100% of PV cases and lead to high diagnostic certainty.6 Absence of a JAK2 mutation, combined with normal or increased serum erythropoietin level, greatly decreases the likelihood of a PV diagnosis.

Though testing for the JAK2 mutations can be serially performed given that the exon 14 mutation is by far the most common, some experts favor targeting both exons 14 and 12 at the same time, in order to avoid undue delays in the diagnostic process; additionally, peripheral blood and bone marrow samples are equally informative in detecting and quantifying JAK2V617F.6 Patients with JAK2 exon 12-mutated PV tend to be younger in age, have increased mean hemoglobin/hematocrit, and lower mean white blood cell and platelet counts at diagnosis compared to those with JAK2 V617F-mutated PV. However, the JAK2 mutations do not confer any differences in prognosis and survival for patients with PV.5

Over 50% of patients with PV harbor DNA sequence variants/mutations other than JAK2, with the most frequent being TET2 (18%) and ASXL1 (15%). Prognostically adverse mutations include SRSF2, IDH2, RUNX1, and U2AF1, with a combined incidence of 5%–10%.6 Though these may be prognostically informative, they are not required for a diagnosis when a JAK2 mutation is identified.

Essential Thrombocythemia (ET)

ET is a disorder of sustained increased platelet count with bone marrow biopsy showing proliferation mainly of the megakaryocytic lineage. Common clinical presentations include hemorrhage and splenomegaly (each occurring in about 30% of patients) though many patients are asymptomatic and, similar to PV, the diagnosis may be suspected based on findings from a complete blood count (CBC) performed for other reasons.7 Hemorrhagic and thrombotic complications occur in <10% to 84% of patients.7

Approximately 50-60% of ET patients carry a somatic JAK2 V617F mutation, while a much smaller percentage (3-5%) have activating mutations in MPL (particularly MPLW515L/K in exon 10). Frameshift mutations in exon 9 of CALR are reported in approximately 20% to 35% of all patients. Another 20% of cases are triple-negative (non-mutated JAK2, MPL, and CALR).5,6

ICC major criteria for the diagnosis of ET include the presence of a JAK2, CALR, or MPL mutation and the exclusion of other MPNs and myeloid neoplasms; minor criteria include the presence of another clonal marker or absence of evidence of reactive thrombocytosis.2,5

Primary Myelofibrosis (PMF)

PMF is characterized by a proliferation of abnormal megakaryocytes and granulocytes in the bone marrow, which is replaced with fibrous tissue, leading to bone marrow failure. However, clinical features are similar to ET and recognizing the prefibrotic stage of PMF is necessary to separate it from ET, PV, and fibrotic PMF.3 The approximate incidence of PMF is 1 in 100,000 individuals. As with the other classic MPNs, patients can be asymptomatic in the early stages of the disease and progression can include transformation to AML. Somatic molecular markers in PMF are similar to those found in ET, and include JAK2 V617F (60%), CALR (~25%), and MPL (5-10%%), among others like trisomy of chromosome 9 and deletion of chromosome 13q.

ICC major criteria for the diagnosis of PMF include presence of a mutation in JAK2, CALR, MPL or presence of another clonal marker (i.e. ASXL1, EZH2, IDH1, IDH2, SF3B1, SRSF2, and TET2 mutations) or absence of reactive bone marrow reticulin fibrosis in the presence of relevant bone marrow findings (i.e. megakaryocytic proliferation and atypia, and appropriate amount of fibrosis for the pre-fibrotic vs fibrotic stages of disease).2,5 As in ET, major criteria also include the exclusion of the other MPNs, MDS and myeloid neoplasms. 2,5 Additionally, molecular testing for AML-associated gene alterations (i.e. mutations in ASXL1, EZH2, TP53, SRSF2, and IDH1 or IDH2; aberrations in chromosomes 1q and 9p) is recommended as part of the initial workup of patients with accelerated/blast phase PMF.5

Transformation and Survival in PV, ET, and PMF

ET transforms into PV in about 2% of patients and both ET and PV can transform into PMF and AML. Overall transformation rates of the three MPNs into leukemia range from about 2 and 4% for ET and PV, respectively, to about 9% for PMF at 20 years.7,8 Patients with MPNs also have a higher risk of other malignancies (i.e. skin, brain, kidney etc.). Median overall survival (OS) in PV, ET, and PMF is about 12 years, 12-14 years, and 4 years, respectively.7,8

Specific driver mutations have been reported to impact rates of leukemic transformation, risk of thrombosis, and overall survival (OS). For example, ET and PMF patients with CALR mutations have a lower risk of thrombosis compared with patients harboring a JAK2 mutation.5,9 However, there is no reported difference in OS or myelofibrotic or leukemic transformation compared to JAK2-mutated ET.5,9 Other mutations are also known to have prognostic impact.

For a list of gene alterations associated with prognostic implications, see Table 1: Prognostic Significance of Mutations in BCR-ABL Negative MPNs.

NON-CLASSICAL BCR-ABL-NEGATIVE MPNs

Chronic neutrophilic leukemia (CNL) is a BCR-ABL-negative MPN characterized by sustained non-reactive peripheral blood neutrophilia, bone marrow hypercellularity due to neutrophilic granulocyte proliferation, and hepatosplenomegaly. Mutations in the CSF3R gene (CSF3R T618I and others) are detected in 60-90% of cases and constitute the diagnostic genetic signature of CNL, though the absence of a CSF3R mutation does not exclude the possibility of CNL.2 However, additional mutations are also seen in most cases, including SETBP1, ASXL1, SRSF2, and other signaling mutations.2 An additional diagnostic criterion for CNL requires the exclusion of BCR-ABL-positive CML, PV, ET, PMF or myeloid/lymphoid neoplasms with eosinophilia and tyrosine kinase gene fusions.2 Most patients with CNL have a poor prognosis, with a mean overall survival of 1.8 years.2

Chronic eosinophilic leukemia, not otherwise specified, (CEL, NOS) is a MPN characterized by persistent eosinophilia that does not meet the diagnostic criteria for any of the other defined hematologic disorders. Bone marrow findings include hypercellularity with dysplastic megakaryocytes and significant fibrosis associated with an eosinophilic infiltrate.2 The diagnosis requires that no tyrosine kinase gene fusions (including BCR-ABL, other ABL1, PDGFRA, PDGFRB, FGFR1, JAK2, or FLT3 fusions) are identified.2

MPN, unclassifiable (MPN-U) is the term used for cases with clinico- morphologic and molecular features of a MPN but that do not satisfy the diagnostic criteria of any of the other defined hematologic disorders or MPN subtypes. This may include patients with a very early-stage untypeable MPN. Such cases must be closely followed such that a specific MPN diagnosis can be rendered as soon as possible.2

SPECIAL CONSIDERATIONS REGARDING TESTING FOR GENE ALTERATIONS IN BCR-ABL NEGATIVE MPN

NCCN guidelines endorse either the single-gene PCR reflex testing approach or the initial multigene approach for the molecular diagnosis of BCR-ABL negative MPNs. For the single-gene approach, guidelines recommend that molecular testing of blood or bone marrow for JAK2 V617F be performed; if negative, it is important to test for CALR and MPL mutations (for patients with suspected ET and PMF) and JAK2 exon 12 mutations (for patients with suspected PV).5 The alternative multigene approach to testing involves the performance of a panel that includes all relevant genes required to establish a diagnosis that can be reasonably assessed by the test. In either case, highly sensitive assays are required for the diagnostic molecular testing of MPNs. Tests detecting JAK2 V617F must have a lower detection limit of <1% VAF and those detecting mutations in CALR and MPL require lower detection limits of 1% to 3%.2,5 Further, in triple-negative cases, it is important to search for noncanonical JAK2 and MPL gene alterations.5

While JAK2, CALR, and MPL mutations are considered driver events in BCR-ABL negative MPN, such driver mutations are not always found, even in the classical MPNs. This is the case for approximately 10% of patients with PMF.5 For such triple-negative cases, NGS may be useful to establish clonality in these or other less commonly associated genes.5 Finding a JAK2 V617F VAF of <1% should also prompt the search for coexisting canonical CALR and MPL mutations.2,5 Further, mutations in other genes – mainly TET2, ASXL1, and DNMT3A – are found in over half of patients with MPN, whereas mutations affecting splicing, cellular signaling and other functions are less common.3 These less common mutations are more frequently observed in PMF and in advanced disease compared to PV and ET and may be prognostically important.3

Once a MPN diagnosis has been confirmed NCCN guidelines recommend testing of additional genes by NGS for mutational prognostication.5 As shown in Table 1 below, alterations in driver and other genes are associated with overall survival (OS), PMF-free survival (for PV and ET), and rates of leukemic transformation.3,5,9 For example, for patients with PMF, survival is longest for CALR(+) ASXL1(-) patients and shortest for CALR(-) ASXL1(+) patients (median survival is approximately 10 vs 2 years, respectively).5 In PV and ET, adverse mutations in SRSF2 (PV) and SRSF2, SF3B1, U2AF1, and TP53 (ET) are included in risk stratification.5

The presence of specific clonal markers can help guide patient management. For example, one of the main goals of management for PV and ET is to identify patients at high risk for thrombosis and prevent complications. For PV and ET, such high-risk individuals include those age >60 years and those with a history of thrombotic event(s). However, as previously discussed, CALR mutations are also used in assessing risk for thrombosis which can be used to inform therapy decisions.5 Similarly, mutations in ASXL1 independently predict inferior survival in PMF and should be included in testing PMF patients planned for stem cell transplant (SCT), the only potentially curative option.9 Mutations in RAS are associated with refractoriness to JAK-inhibitor (JAKi) therapy9 and the presence of high molecular risk mutations or three or more mutations has been associated with inferior response to interferon alfa-2b or peginterferon alfa-2a in patients with PMF.10 In the COMFORT-II study, patients harboring prognostically detrimental mutations (ASXL1, EZH2, SRSF2, IDH1/2) had improved survival and reduced the risk of death when treated with Ruxolitinib.11

In rare circumstances, concurrent alterations in BCR-ABL and JAK2 have been reported. A multi-center study evaluating 1570 patients with suspected MPN found that only 6 (0.4%) tested positive for mutations in both BCR–ABL1 and JAK2 V617F.12 For some patients, the second alteration was identified up to 129 months later; in 5 of these cases, BCR–ABL1 was initially negative for alterations and the mutation in JAK2 was the first to be diagnosed.12 In none of the concurrently mutated cases were there any overt histomorphologic characteristics predictive of the subsequent development of CML.12 The investigators concluded that the co-occurrence of the mutations likely reflects two distinct MPN processes that occur sequentially. Findings that might raise the index of suspicion for the presence of concurrent mutations in BCR–ABL1 and JAK2 include mixed bone marrow cytologic features and unexpected changes in bone marrow histomorphology and laboratory parameters.12

Finally, the clinical utility of quantitating the JAK2 V617F allele burden for the purpose of monitoring disease progression and therapy response is an evolving topic. Allele burden reductions JAK2 V617F have been noted in patients with PMF after ruxolitinib therapy and have also correlated with spleen volume reductions; JAK2 V617F negativity or allele burden reduction after allogeneic HCT has also been associated with a decreased incidence of relapse.13-16 Additionally, a high JAK2 allele burden has been reported as a risk factor for myelofibrotic transformation and thrombotic events in patients with PV and ET. A multicenter study of 347 JAK2V617F-positive patients found that those with a persistently high (≥50%) or unsteady JAK2V617F load at follow-up had an increased risk of myelofibrotic transformation and a trend for a higher incidence of thrombosis (incidence rate ratios [IRR] 20.7 and 1.7, respectively) than patients with a stable allele burden below 50%.17 Therefore, monitoring of JAK2V617F allele burden may be useful in patients with MPN for predicting disease's complications, particularly myelofibrotic transformation.17 It may also be useful to help assess the impact of molecular response to therapy. However, the utility of JAK2 V617F allele burden reduction as a predictor of clinical outcome is not well-established and NCCN guidelines do not currently recommend the routine monitoring of JAK2 V617F allele frequency to guide treatment decisions.5 The International Working Group-Myeloproliferative Neoplasms Research and Treatment (IWG-MRT) and European LeukemiaNet (ELN) consensus report also do not require cytogenetic and molecular responses for assignment of complete response in PMF.18

Table 1: Prognostic Significance of Mutations in BCR-ABL Negative MPNs (adapted from NCCN Myeloproliferative neoplasms, version 2.2023 Tables MPN-E5 and Vannucchi and Guglielmelli 20229)

Mutated Gene Polycythemia Vera Essential Thrombocythemia Primary Myelofibrosis
JAK2 JAK2 V617F and JAK2 exon 12 mutation: Similar rates of thrombosis, evolution to PMF or leukemia, and death. JAK2 V617F: Higher risk of thrombosis JAK2 V617F: Intermediate prognosis and higher risk of thrombosis than patients with mutations in CALR.
CALR  

Lower risk of thrombosis compared to JAK2-mutated ET.

No difference in OS or myelofibrotic or leukemic transformation compared to JAK2-mutated ET.

Lower risk of thrombosis compared to JAK2 mutation.

Improved OS compared to JAK2 and "triple-negative" PMF.

CALR Type 1/Type 1-like     Improved OS compared to CALR type 2/ type 2-like and JAK2 V617F mutation.
MPL W515L/K    

Lower hemoglobin levels at diagnosis and increased risk of transfusion dependence.

Intermediate prognosis and higher risk of thrombosis compared to patients with CALR mutation.
"Triple Negative"
(non-mutated JAK2, MPL,
and CALR)
   

Inferior LFS compared to patients with JAK2 and/or CALR-mutated PMF.

Inferior OS compared to patients with CALR-mutated PMF.
TP53   Inferior LFS Associated with leukemic transformation.
ASXL1, IDH1/2, RUNX1, SRSF2 The presence of at least 1 is associated with inferior OS. ASXL1: Inferior PMF-free survival; IDH2 and RUNX1: Inferior LFS    
ASXL1, EZH2, IDH 1 and 2, RAS, SRSF2, U2AF1 Q157     ASXL1, EZH2 RAS, SRSF2, U2AF1 Q157: Inferior OS. ASXL1, IDH 1 and 2, SRSF2: Inferior LFS; ASXL1, IDH 1 and 2: Inferior PFS following HCT.
U2AF1 or DNMT3A or CBL     U2AF1 or DNMT3A or CBL: worse OS in patients undergoing allogeneic HCT.

EZH2, IDH2, RUNX1, SH2B3, SRSF2, SF3B1, TP53, U2AF1

  The presence of at least 1 is associated with inferior OS. U2AF1 and SF3B1: Inferior PMF-free survival; EZH2 and RUNX1: Inferior LFS  

NOTE: Where there is no information provided in the table, NCCN guidelines have not attributed prognostic significance for a particular gene mutation for the given disorder. LFS: leukemia-free survival; PFS: progression-free survival, OS: overall survival

Analysis of Evidence (Rationale for Determination)

Multiple studies have demonstrated the diagnostic value of JAK2, CALR, and MPL mutation status in patients with BCR-ABL-negative MPNs. It is additionally clear that mutations other genes also play a role in diagnosis and in assessing clonality, particularly when mutations in the three ‘main’ driver genes (JAK2, CALR, and MPL) are absent. Further, these gene variants also serve as prognostic indicators and are included in risk stratification schemas that may guide patient management. Therefore, although the single-gene reflexive approach for a rapid initial diagnosis is acceptable given the high prevalence and concordance of specific gene mutations with specific MPN types, the use of gene panels for more extensive testing can provide significant additional benefits. Panel testing, particularly by NGS methods, can interrogate many more relevant gene alterations that can help identify patients at highest risk for disease progression as well as those who might benefit from a specific drug or other therapeutic intervention (such as transplantation in the case of PMF). Regardless of the test methodology used, an accurate diagnosis requires the use of highly sensitive assays for JAK2 V617F (VAF <1%), CALR and MPL (VAF 1%-3%) with additional non-canonical mutations tested in triple-negative cases.

For the diagnosis of all MPNs except PV, national and international guidelines require the exclusion of other MPNs and CML. Therefore, BCR-ABL and MPN-associated driver gene mutations must be interrogated in all cases of MPN (except PV), as these gene alterations are included in the diagnostic criteria for those entities that require exclusion. Further, co-existing mutations in JAK2 and BCR-ABL have been reported in rare cases which can be clinically confounding. Therefore, in patients with high clinical suspicion of PV despite a positive BCR-ABL result, testing for a JAK2 mutation should still be performed. It is important to note that despite significant overlap, the WHO, ICC and NCCN guidelines are not identical. For example, unlike the WHO, the ICC does not consider Juvenile myelomonocytic leukemia (JMML) as one of the BCR-ABL negative MPNs. Meanwhile, NCCN guidelines only focus on the classical MPNs. Where disagreement exists between the guidelines, this contractor has published criteria aligned with the agreement of at least two of these governing bodies.

Finally, though there is clinical validity associated with the quantitation of JAK2 for the purpose of MRD testing, to-date, the clinical utility of this approach has not been established. For example, it is not clear with what frequency testing should be performed nor is it clear how to alter patient management with a given result. Though such studies are in development, to-date NCCN and other guidelines do not recommend monitoring the JAK2 VAF for the purpose of assessing response to therapy. Moreover, we note that testing JAK2 V617F for the purpose of evaluating minimal residual disease (MRD) is not within scope of this LCD; any such testing must comply with the criteria outlined in LCD L38779, MolDX: Minimal Residual Disease Testing for Cancer.

Proposed Process Information

Synopsis of Changes
Changes Fields Changed
Not Applicable N/A
Associated Information
N/A
Sources of Information
N/A
Bibliography
  1. Barbui T, Thiele J, Gisslinger H, et al. The 2016 WHO classification and diagnostic criteria for myeloproliferative neoplasms: document summary and in-depth discussion. Blood Cancer J. 2018;8(2):15. doi:10.1038/s41408-018-0054-y
  2. Arber DA, Orazi A, Hasserjian RP, et al. International consensus classification of myeloid neoplasms and acute leukemias: integrating morphologic, clinical, and genomic data. Blood. 2022;140(11):1200-1228. doi:10.1182/blood.2022015850
  3. Khoury JD, Solary E, Abla O, et al. The 5th edition of the World Health Organization classification of haematolymphoid tumours: myeloid and histiocytic/dendritic neoplasms. Leukemia. 2022;36(7):1703-1719. doi:10.1038/s41375-022-01613-1
  4. Arber DA, Hasserjian RP, Orazi A, et al. Classification of myeloid neoplasms/acute leukemia: global perspectives and the international consensus classification approach. Am J Hematol. 2022;97(5):514-518. doi:10.1002/ajh.26503
  5. National comprehensive cancer network. Nccn clinical practice guidelines in oncology. Myeloproliferative neoplasms. Version 2.2023. Plymouth meeting, pa: Nccn; 2023.
  6. Tefferi A, Barbui T. Polycythemia vera: 2024 update on diagnosis, risk-stratification, and management. Am J Hematol. 2023;98(9):1465-1487. doi:10.1002/ajh.27002
  7. Kuipers RS, Kok L, Virmani R, Tefferi A. Essential thrombocytosis: diagnosis, differential diagnosis, complications and treatment considerations of relevance for a cardiologist. Neth Heart J. 2023;31(10):371-378. doi:10.1007/s12471-023-01757-4
  8. Smith CJ, Thomas JW, Ruan G, et al. A population-based study of outcomes in polycythemia vera, essential thrombocythemia, and primary myelofibrosis in the United States from 2001 to 2015: comparison with data from a Mayo Clinic single institutional series. Am J Hematol. 2021;96(12):E464-E468. doi:10.1002/ajh.26377
  9. Vannucchi AM, Guglielmelli P. Molecular prognostication in ph-negative mpns in 2022. Hematology Am Soc Hemato Educ Program. 2022;2022(1):225-234. doi:10.1182/hematology.2022000339
  10. Silver RT, Barel AC, Lascu E, et al. The effect of initial molecular profile on response to recombinant interferon- α (rIFNα) treatment in early myelofibrosis. Cancer. 2017;123(14):2680-2687. doi:10.1002/cncr.30679
  11. Guglielmelli P, Biamonte F, Rotunno G, et al. Impact of mutational status on outcomes in myelofibrosis patients treated with ruxolitinib in the COMFORT-II study. Blood. 2014;123(14):2157-2160. doi:10.1182/blood-2013-11-536557
  12. Soderquist CR, Ewalt MD, Czuchlewski DR, et al. Myeloproliferative neoplasms with concurrent BCR-ABL1 translocation and JAK2 V617F mutation: a multi-institutional study from the bone marrow pathology group. Mod Pathol. 2018;31(5):690-704. doi:10.1038/modpathol.2017.182
  13. Alchalby H, Badbaran A, Zabelina T, et al. Impact of JAK2V617F mutation status, allele burden, and clearance after allogeneic stem cell transplantation for myelofibrosis. Blood. 2010;116(18):3572-3581. doi:10.1182/blood-2009-12-260588
  14. Lange T, Edelmann A, Siebolts U, et al. JAK2 p.V617F allele burden in myeloproliferative neoplasms one month after allogeneic stem cell transplantation significantly predicts outcome and risk of relapse. Haematologica. 2013;98(5):722-728. doi:10.3324/haematol.2012.076901
  15. Deininger M, Radich J, Burn TC, Huber R, Paranagama D, Verstovsek S. The effect of long-term ruxolitinib treatment on JAK2p.V617F allele burden in patients with myelofibrosis. Blood. 2015;126(13):1551-1554. doi:10.1182/blood-2015-03-635235
  16. Vannucchi AM, Verstovsek S, Guglielmelli P, et al. Ruxolitinib reduces JAK2 p.V617F allele burden in patients with polycythemia vera enrolled in the RESPONSE study. Ann Hematol. 2017;96(7):1113-1120. doi:10.1007/s00277-017-2994-x
  17. Alvarez-Larrán A, Bellosillo B, Pereira A, et al. JAK2v617F monitoring in polycythemia vera and essential thrombocythemia: clinical usefulness for predicting myelofibrotic transformation and thrombotic events. Am J Hematol. 2014;89(5):517-523. doi:10.1002/ajh.23676
  18. Tefferi A, Cervantes F, Mesa R, et al. Revised response criteria for myelofibrosis: International Working Group-Myeloproliferative Neoplasms Research and Treatment (IWG-MRT) and European LeukemiaNet (ELN) consensus report. Blood. 2013;122(8):1395-1398. doi:10.1182/blood-2013-03-488098
Open Meetings
Meeting Date Meeting States Meeting Information
09/13/2024 Alaska
Arizona
Idaho
Montana
North Dakota
Oregon
South Dakota
Utah
Washington
Wyoming

Teleconference only

N/A
Contractor Advisory Committee (CAC) Meetings
Meeting Date Meeting States Meeting Information
N/A
MAC Meeting Information URLs
N/A
Proposed LCD Posting Date
08/01/2024
Comment Period Start Date
08/01/2024
Comment Period End Date
09/15/2024
Reason for Proposed LCD
  • Provider Education/Guidance
Requestor Information
This request was MAC initiated.
Requestor Name Requestor Letter
View Letter
N/A
Contact for Comments on Proposed LCD
Noridian Healthcare Solutions, LLC JF Part B Contractor Medical Director(s)
Attention: Draft LCD Comments
PO Box 6781
Fargo, ND 58108-6781
policydraft@noridian.com

Coding Information

Bill Type Codes

Code Description

Please accept the License to see the codes.

N/A

Revenue Codes

Code Description

Please accept the License to see the codes.

N/A

CPT/HCPCS Codes

Please accept the License to see the codes.

N/A

ICD-10-CM Codes that Support Medical Necessity

Group 1

Group 1 Paragraph:

N/A

Group 1 Codes:

N/A

N/A

ICD-10-CM Codes that DO NOT Support Medical Necessity

Group 1

Group 1 Paragraph:

N/A

Group 1 Codes:

N/A

N/A

Additional ICD-10 Information

General Information

Associated Information
N/A
Sources of Information
N/A
Bibliography
  1. Barbui T, Thiele J, Gisslinger H, et al. The 2016 WHO classification and diagnostic criteria for myeloproliferative neoplasms: document summary and in-depth discussion. Blood Cancer J. 2018;8(2):15. doi:10.1038/s41408-018-0054-y
  2. Arber DA, Orazi A, Hasserjian RP, et al. International consensus classification of myeloid neoplasms and acute leukemias: integrating morphologic, clinical, and genomic data. Blood. 2022;140(11):1200-1228. doi:10.1182/blood.2022015850
  3. Khoury JD, Solary E, Abla O, et al. The 5th edition of the World Health Organization classification of haematolymphoid tumours: myeloid and histiocytic/dendritic neoplasms. Leukemia. 2022;36(7):1703-1719. doi:10.1038/s41375-022-01613-1
  4. Arber DA, Hasserjian RP, Orazi A, et al. Classification of myeloid neoplasms/acute leukemia: global perspectives and the international consensus classification approach. Am J Hematol. 2022;97(5):514-518. doi:10.1002/ajh.26503
  5. National comprehensive cancer network. Nccn clinical practice guidelines in oncology. Myeloproliferative neoplasms. Version 2.2023. Plymouth meeting, pa: Nccn; 2023.
  6. Tefferi A, Barbui T. Polycythemia vera: 2024 update on diagnosis, risk-stratification, and management. Am J Hematol. 2023;98(9):1465-1487. doi:10.1002/ajh.27002
  7. Kuipers RS, Kok L, Virmani R, Tefferi A. Essential thrombocytosis: diagnosis, differential diagnosis, complications and treatment considerations of relevance for a cardiologist. Neth Heart J. 2023;31(10):371-378. doi:10.1007/s12471-023-01757-4
  8. Smith CJ, Thomas JW, Ruan G, et al. A population-based study of outcomes in polycythemia vera, essential thrombocythemia, and primary myelofibrosis in the United States from 2001 to 2015: comparison with data from a Mayo Clinic single institutional series. Am J Hematol. 2021;96(12):E464-E468. doi:10.1002/ajh.26377
  9. Vannucchi AM, Guglielmelli P. Molecular prognostication in ph-negative mpns in 2022. Hematology Am Soc Hemato Educ Program. 2022;2022(1):225-234. doi:10.1182/hematology.2022000339
  10. Silver RT, Barel AC, Lascu E, et al. The effect of initial molecular profile on response to recombinant interferon- α (rIFNα) treatment in early myelofibrosis. Cancer. 2017;123(14):2680-2687. doi:10.1002/cncr.30679
  11. Guglielmelli P, Biamonte F, Rotunno G, et al. Impact of mutational status on outcomes in myelofibrosis patients treated with ruxolitinib in the COMFORT-II study. Blood. 2014;123(14):2157-2160. doi:10.1182/blood-2013-11-536557
  12. Soderquist CR, Ewalt MD, Czuchlewski DR, et al. Myeloproliferative neoplasms with concurrent BCR-ABL1 translocation and JAK2 V617F mutation: a multi-institutional study from the bone marrow pathology group. Mod Pathol. 2018;31(5):690-704. doi:10.1038/modpathol.2017.182
  13. Alchalby H, Badbaran A, Zabelina T, et al. Impact of JAK2V617F mutation status, allele burden, and clearance after allogeneic stem cell transplantation for myelofibrosis. Blood. 2010;116(18):3572-3581. doi:10.1182/blood-2009-12-260588
  14. Lange T, Edelmann A, Siebolts U, et al. JAK2 p.V617F allele burden in myeloproliferative neoplasms one month after allogeneic stem cell transplantation significantly predicts outcome and risk of relapse. Haematologica. 2013;98(5):722-728. doi:10.3324/haematol.2012.076901
  15. Deininger M, Radich J, Burn TC, Huber R, Paranagama D, Verstovsek S. The effect of long-term ruxolitinib treatment on JAK2p.V617F allele burden in patients with myelofibrosis. Blood. 2015;126(13):1551-1554. doi:10.1182/blood-2015-03-635235
  16. Vannucchi AM, Verstovsek S, Guglielmelli P, et al. Ruxolitinib reduces JAK2 p.V617F allele burden in patients with polycythemia vera enrolled in the RESPONSE study. Ann Hematol. 2017;96(7):1113-1120. doi:10.1007/s00277-017-2994-x
  17. Alvarez-Larrán A, Bellosillo B, Pereira A, et al. JAK2v617F monitoring in polycythemia vera and essential thrombocythemia: clinical usefulness for predicting myelofibrotic transformation and thrombotic events. Am J Hematol. 2014;89(5):517-523. doi:10.1002/ajh.23676
  18. Tefferi A, Cervantes F, Mesa R, et al. Revised response criteria for myelofibrosis: International Working Group-Myeloproliferative Neoplasms Research and Treatment (IWG-MRT) and European LeukemiaNet (ELN) consensus report. Blood. 2013;122(8):1395-1398. doi:10.1182/blood-2013-03-488098

Revision History Information

Revision History Date Revision History Number Revision History Explanation Reasons for Change
N/A

Associated Documents

Attachments
N/A
Related National Coverage Documents
N/A
Public Versions
Updated On Effective Dates Status
07/23/2024 N/A - N/A Superseded You are here

Keywords

  • Non-Next Generation Sequencing
  • BCR-ABL Negative Myeloproliferative Neoplasms

Read the LCD Disclaimer